Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.
Identifieur interne : 002B23 ( Main/Exploration ); précédent : 002B22; suivant : 002B24Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.
Auteurs : Steven D. Brown [États-Unis] ; Dawn M. Klingeman ; Tse-Yuan S. Lu ; Courtney M. Johnson ; Sagar M. Utturkar ; Miriam L. Land ; Christopher W. Schadt ; Mitchel J. Doktycz ; Dale A. PelletierSource :
- Journal of bacteriology [ 1098-5530 ] ; 2012.
Descripteurs français
- KwdFr :
- MESH :
- génétique : ADN bactérien, Rhizobium.
- isolement et purification : Rhizobium.
- microbiologie : Populus.
- Chromosomes de bactérie, Données de séquences moléculaires, Génome bactérien, Régulation de l'expression des gènes bactériens.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Bacterial.
- genetics : Rhizobium.
- isolation & purification : Rhizobium.
- microbiology : Populus.
- Chromosomes, Bacterial, Gene Expression Regulation, Bacterial, Genome, Bacterial, Molecular Sequence Data.
Abstract
Rhizobium sp. strain PDO1-076 is a plant-associated bacterium isolated from Populus deltoides, and its draft genome sequence is reported.
DOI: 10.1128/JB.00198-12
PubMed: 22493196
PubMed Central: PMC3347069
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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IdType="pubmed">16261860</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Plant Biol. 2006;57:233-66</Citation><ArticleIdList><ArticleId IdType="pubmed">16669762</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2011 Sep;77(17):5934-44</Citation><ArticleIdList><ArticleId IdType="pubmed">21764952</ArticleId></ArticleIdList></Reference><Reference><Citation>J Bacteriol. 2009 Apr;191(8):2501-11</Citation><ArticleIdList><ArticleId IdType="pubmed">19251847</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2010;11:119</Citation><ArticleIdList><ArticleId IdType="pubmed">20211023</ArticleId></ArticleIdList></Reference><Reference><Citation>Syst Appl Microbiol. 2010 Aug;33(5):247-51</Citation><ArticleIdList><ArticleId IdType="pubmed">20627641</ArticleId></ArticleIdList></Reference><Reference><Citation>J Bacteriol. 2010 Nov;192(22):6099-100</Citation><ArticleIdList><ArticleId IdType="pubmed">20851897</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2008 May;18(5):821-9</Citation><ArticleIdList><ArticleId IdType="pubmed">18349386</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Tennessee</li></region></list><tree><noCountry><name sortKey="Doktycz, Mitchel J" sort="Doktycz, Mitchel J" uniqKey="Doktycz M" first="Mitchel J" last="Doktycz">Mitchel J. Doktycz</name><name sortKey="Johnson, Courtney M" sort="Johnson, Courtney M" uniqKey="Johnson C" first="Courtney M" last="Johnson">Courtney M. Johnson</name><name sortKey="Klingeman, Dawn M" sort="Klingeman, Dawn M" uniqKey="Klingeman D" first="Dawn M" last="Klingeman">Dawn M. Klingeman</name><name sortKey="Land, Miriam L" sort="Land, Miriam L" uniqKey="Land M" first="Miriam L" last="Land">Miriam L. Land</name><name sortKey="Lu, Tse Yuan S" sort="Lu, Tse Yuan S" uniqKey="Lu T" first="Tse-Yuan S" last="Lu">Tse-Yuan S. Lu</name><name sortKey="Pelletier, Dale A" sort="Pelletier, Dale A" uniqKey="Pelletier D" first="Dale A" last="Pelletier">Dale A. Pelletier</name><name sortKey="Schadt, Christopher W" sort="Schadt, Christopher W" uniqKey="Schadt C" first="Christopher W" last="Schadt">Christopher W. Schadt</name><name sortKey="Utturkar, Sagar M" sort="Utturkar, Sagar M" uniqKey="Utturkar S" first="Sagar M" last="Utturkar">Sagar M. Utturkar</name></noCountry><country name="États-Unis"><region name="Tennessee"><name sortKey="Brown, Steven D" sort="Brown, Steven D" uniqKey="Brown S" first="Steven D" last="Brown">Steven D. Brown</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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